PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g036300.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 328aa    MW: 37562.4 Da    PI: 5.7086
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g036300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.87e-12163206654
                       HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                        ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  Sopen02g036300.1 163 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 206
                       589*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.447157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15160219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.2E-12163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9163206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-4164206No hitNo description
Gene3DG3DSA:4.10.280.103.8E-15164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MELTQEDLLE EIVSPRIENW NNTFANAWNI ESPTFYQQNP EFIPSNSSLL DLIMSPSQSN  60
YFPCPDFQES SYPFLHSFTT TTPPQLVIDS SNYNNNIQER AIMEEGQIGH FSADFHGHYE  120
DSFSCYNINK VVKMEEATSR IVGEKKSKNY KVKKVEGQPS KNLMAERRRR KRLNDRLSML  180
RSIVPKISKM DRTSILGDTI DYVKELLDKI NRLHEENEIK DIKFLGNFKG LKTNEALVRN  240
PPKFDVERRN EDETSIEICC GTKPGLLLST VHTMEALGLE VQQCVVSCFS DFSMRASCSE  300
SVDHRTILNS EDVKQALFKT AGYGGRCV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165172ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064269.10.0PREDICTED: transcription factor bHLH93-like
SwissprotQ9LSL13e-80BH093_ARATH; Transcription factor bHLH93
TrEMBLK4BCW70.0K4BCW7_SOLLC; Uncharacterized protein
STRINGSolyc02g091690.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7892497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.14e-79beta HLH protein 93